📰 BioNLP 2026 — papers

The works of BioNLP published in 2026 that our library holds (publisher: Association for Computational Linguistics): 45 works, listed below with the most cited first; each has a page with our summary, its key points and its references.

All works of the year (124)

The most cited first; 45 with our summary link to their page here, the others to the original.

1. Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health RecordsGuanyu Tao, Siyao Wang, Yong Xue et al.1 citation · our summary
2. PromptRad: Knowledge-Enhanced Multi-Label Prompt-Tuning for Low-Resource Radiology Report Labeling ↗Ying-Jia Lin, Tzu-Chin Lo, Ping-Chien Li et al.1 citation
3. A Comparative Analysis of In-Context Learning and Fine-Tuning for Biomedical Information Retrieval and Sentence Extraction Using Research Domain Criteria ↗Athlene Jones, Khanh Lieu, Indika Kahanda
4. A Deterministic Multi-Stage Retrieval Pipeline for Longitudinal EHR Question Answering ↗Shubham Agarwal, Thomas Searle, Richard Dobson et al.
5. A Multi-Agent Open-Source LLM for Structured Cancer Registry Information Extraction from Pathology and Medical Reports ↗Abdulrahman Aal Abdulsalam, Adhari Al Zaabi, Riham Jeeballah et al.
6. A Multi-View Framework for Cross-Domain Nutrition Misinformation Detection in Social MediaVishwaa Shah, Indika Kahanda, Andrea Arikawa et al.our summary
7. AAbAAC: An Annotated Corpus for Autoimmunity Information ExtractionFabien Maury, Solène Grosdidier, Maud de Dieuleveult et al.our summary
8. Agentic AI Architectures for SOAP Note Generation ↗Keno Hanken
9. Agentic Feature Selection via LLM for Epileptic Seizure Detection ↗Aizierjiang Aiersilan, Xiaodong Qu
10. AlienAnnotators at PsyDefDetect: What Lies Between the Lines: Probing Lightweight Open-Source LLMs for Psychological Defense Mechanism Detection ↗Siam Rahman Karip, Nahid Hossain
11. Analyzing Prompt Design Choices in Biomedical Information Extraction for Low-Resource Languages ↗Ayesha Khatun, Kadir Bulut Ozler, Steven Bethard et al.
12. Beyond Knowledge Graphs: PubMedBERT Embeddings as a Competitive Standalone Modality for Drug Re-purposing ↗Rishik Kondadadi, John E. Ortega
13. BioConflict: A Benchmark for Evaluating Large Language Models in Biomedical Contradiction Detection and Consensus Synthesis ↗Ashwin Kirubakaran, Henry Gagnier
14. BioCoref: Benchmarking Biomedical Coreference Resolution with LLMs ↗Nourah Salem, Elizabeth White, Michael Bada et al.
15. BioRAG: A Systematic Ablation Study of Retrieval Strategies for Biomedical Question Answering ↗Krushil Bhojani, Mayank Waghmare, Hima Bindu Nandyala
16. BioTopicXplor: A Web Tool for Interactive Exploration of PubMed Literature through Reproducible Topics. ↗Lana Yeganova, Donald Comeau, Won Kim et al.
17. Bridging the Version Gap: Multi-version Training Improves ICD Code Prediction, Especially for Rare Codes ↗Jinghui Liu, Anthony Nguyen
18. CAP: A Source-Grounded Proposition Scaffold for Faithful Clinical Dialogue-to-Note Generation ↗Hyunkyung Lee, Jisoo Jung, Jeonguk Lee et al.
19. CASPAR: A Context-Aware Span Refinement Approach for Decision SupportJing Tao, Amir Eskandari, Farhana Zulkernineour summary
20. CENT: Context Engineering Framework for Normalization of Clinical Trial ProceduresSanya Taneja, Ziqing Ji, Hans Verstraete et al.our summary
21. CS_Metro at PsyDefDetect: Detecting Psychological Defense Mechanisms in Mental Health Dialogues with Summarization-Enhanced Transformer EnsemblesOarisa Rebayet, Radiul Walee, Symom Hossain Shohan et al.our summary
22. CUAMC @ MedExACT 2026: Robust Ensemble Voting for Fair Medical Decision Extraction ↗William Baumgartner, Lisa Schilling
23. Can NLP Models Detect When One Publication Outweighs Twenty? Predicting Systematic Review Conclusion Changes ↗Ebrahim Alharbi, Mark Stevenson
24. Citation-Aware Continual Pre-Training for Biomedical Language Models ↗Masaki Asada, Tomoki Tsujimura, Tatsuya Ishigaki et al.
25. Clinical Evidence and Patient Reviews: A Linked Dataset for Antidepressant Side Effects ↗Steven Au

See all 124 papers in BioNLP 2026 — papers →

📄 Works with our summary in our library (45)

The most cited first (OpenAlex citations plus our library's).

1. Overview of the PsyDefDetect Shared Task at BioNLP 2026: Detecting Levels of Psychological Defense Mechanisms in Supportive ConversationsBioNLPHongbin Na, Zimu Wang, Zhaoming Chen, et al.2026 · 13 citations
2. Diagnosable ColBERT: Debugging Late-Interaction Retrieval Models Using a Learned Latent Space as ReferenceBioNLPFrançois Remy2026 · 2 citations
3. Nürnberg NLP at PsyDefDetect: Multi-Axis Voter Ensembles for Psychological Defence Mechanism ClassificationBioNLPPhilipp Steigerwald, Eric Rudolph, Jens Albrecht2026 · 2 citations
4. Otter at MedExAct2026: Diverse Encoder Ensemble for Medical Decision Span DetectionBioNLPLalita Lowphansirikul, Piyalitt Ittichaiwong2026 · 1 citation
5. When Retrieval Doesn't Help: A Large-Scale Study of Biomedical RAGBioNLPErfan Nourbakhsh, Rocky Slavin, Ke Yang, et al.2026 · 1 citation
6. TONI-NLP at PsyDefDetect: Defense Mechanism Detection via LLM-based Ensemble MethodsBioNLPDurjoy Paul, Arshitha Basavaraj, Callum Chan, et al.2026 · 1 citation
7. CS_Metro at PsyDefDetect: Detecting Psychological Defense Mechanisms in Mental Health Dialogues with Summarization-Enhanced Transformer EnsemblesBioNLPOarisa Rebayet, Radiul Walee, Symom Hossain Shohan, et al.2026 · 1 citation
8. transformer_1376 at PsyDefDetect: A QLoRA-Based Generative Framework for Context-Aware Psychological Defense Mechanism DetectionBioNLPPritha Saha, Shuvodwip Saha, Anik Mahmud Shanto2026 · 1 citation
9. LAMAR-2 at MedGenVidQA 2026: Visual Answer Localization in Medical Videos via Multimodal LLM and Context-Augmented PromptingBioNLPWatcharitpol Sermsrisuwan, Nopporn Lekuthai, Seksan Yoadsanit, et al.2026 · 1 citation
10. CASPAR: A Context-Aware Span Refinement Approach for Decision SupportBioNLPJing Tao, Amir Eskandari, Farhana Zulkernine2026 · 1 citation
11. Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health RecordsBioNLPGuanyu Tao, Siyao Wang, Yong Xue, et al.2026 · 1 citation
12. Seahawk at MedGenVidQA 2026: LLM Segment-Range Selection for Medical Visual Answer LocalizationBioNLPXiaotian Tian, Gulustan Dogan2026 · 1 citation
13. DAL Team at PsyDefDetect: From Supervised Encoders to Hierarchical LLM-RAG for Psychological Defense DetectionBioNLPDuc-Luong Tran, Phuong-Anh Chu, Hoang-Dat Do, et al.2026 · 1 citation
14. VISHC at PsyDefDetect: Mitigating Data Scarcity in Psychological Defense Classification with Context-Aware Synthetic AugmentationBioNLPHoang-Thuy-Duong Vu, Quoc-Cuong Pham, Huy-Hieu Pham2026 · 1 citation
15. Trustworthy NLP for Low-Resource Languages: Agent-Based Uncertainty Modeling for Hebrew Radiology Report StructuringHadas Ben Atya, Naama Gavrielov, Zvi Badash, et al.2026
16. KGRxn-LLM: Knowledge Graph Enhanced Large Language Models for Molecular Reaction ReasoningBioNLPWeichen Liu, Qiyao Xue, Yuyang Wu, et al.2026
17. Systematic Evaluation of the Quality of Synthetic Clinical Notes Rephrased by LLMs at Million-Note ScaleBioNLPJinghui Liu, Sarvesh Soni, Anthony Nguyen2026
18. Effects of Adaptive Pretraining in Specialized Domains for Named Entity RecognitionBioNLPJack Lynam, Sam Henry2026
19. VERICITE: Evaluating Sentence-Level Citation Faithfulness in Retrieval-Augmented Medical Question AnsweringBioNLPYixian Ma, Bohao Chu, Norbert Fuhr2026
20. From Rules to Predictions: Federated Tabular Learning with LLM ReasoningBioNLPAfsaneh Mahanipour, Hana Khamfroush2026
21. AAbAAC: An Annotated Corpus for Autoimmunity Information ExtractionBioNLPFabien Maury, Solène Grosdidier, Maud de Dieuleveult, et al.2026
22. NM at CRF Filling 2026: A Two-Stage LLM Pipeline for Clinical CRF PopulationBioNLPNiccolò Morabito2026
23. FACT: Functional Group Alignment and Consistency in Token Space for Structure-aware Molecular Representation LearningBioNLPHyeonyeong Nam, Woojae Choi, Deok-Joong Lee, et al.2026
24. FHexchange: Resources for Family Health History Extraction and Normalization From Consumer Dialog SourcesBioNLPMichelle Nguyen, Nidhi Soley, Ayah Zirikly, et al.2026
25. IndicMedDialog: A Parallel Multi-Turn Medical Dialogue Dataset for Accessible Healthcare in Indic LanguagesBioNLPShubham Kumar Nigam, Suparnojit Sarkar, Piyush Patel2026

See all 45 works in BioNLP 2026 — papers →

🧭 Top topics

Topics of its works in our library, with the number of works on each.

🧠Language models & pretraining (8)📏Evaluation & benchmarks (6)🔍Information retrieval & search (4)🗨️Dialogue systems (3)🧮Reasoning (3)🖼️Vision & language (3)🏷️Named entity recognition (2)❓Question answering (2)🔎Information extraction (2)📝Summarization (2)🌍Multilingual & cross-lingual NLP (1)🌱Low-resource languages (1)🕸️Knowledge graphs & ontologies (1)🕎Hebrew & Aramaic (1)Semitic languages (1)

📚 Fields

🖥️Computer Science (45)🎭Arts and Humanities (26)🧬Biochemistry, Genetics and Molecular Biology (15)🩺Medicine (8)💭Psychology (8)🏥Health Professions (8)🧱Materials Science (2)🤝Social Sciences (2)🧪Chemistry (1)🎯Decision Sciences (1)⚙️Engineering (1)

🧑‍🔬 Top authors

Authors with a page who published here most often: their works here, and the citations of those works.

🏛️ Top institutions

Institutions on the bylines of its works here, by the number of works.

🏛️National Institutes of HealthBethesda · United States3 works here🎓Chittagong University of Engineering & TechnologyChittagong · Bangladesh2 works here🎓King's College LondonLondon · United Kingdom2 works here🎓Mahidol UniversityBangkok · Thailand2 works here🔬United States National Library of MedicineBethesda · United States2 works here🎓University of Duisburg-EssenEssen · Germany2 works here🎓Hiroshima UniversityHiroshima · Japan1 work here🎓University of Technology SydneySydney · Australia1 work here🎓University of North Carolina at Chapel HillChapel Hill · United States1 work here🎓University of North FloridaJacksonville · United States1 work here🏛️Commonwealth Scientific and Industrial Research OrganisationCanberra · Australia1 work here🔬Centre National de la Recherche ScientifiqueParis · France1 work here

works and citations from OpenAlex and our library.

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