📰 BioNLP 2026: all papers in our library

51 works · the most cited first · ← BioNLP 2026

1. Overview of the PsyDefDetect Shared Task at BioNLP 2026: Detecting Levels of Psychological Defense Mechanisms in Supportive ConversationsBioNLPHongbin Na, Zimu Wang, Zhaoming Chen, et al.2026 · 13 citations
2. Diagnosable ColBERT: Debugging Late-Interaction Retrieval Models Using a Learned Latent Space as ReferenceBioNLPFrançois Remy2026 · 2 citations
3. Nürnberg NLP at PsyDefDetect: Multi-Axis Voter Ensembles for Psychological Defence Mechanism ClassificationBioNLPPhilipp Steigerwald, Eric Rudolph, Jens Albrecht2026 · 2 citations
4. Otter at MedExAct2026: Diverse Encoder Ensemble for Medical Decision Span DetectionBioNLPLalita Lowphansirikul, Piyalitt Ittichaiwong2026 · 1 citation
5. When Retrieval Doesn't Help: A Large-Scale Study of Biomedical RAGBioNLPErfan Nourbakhsh, Rocky Slavin, Ke Yang, et al.2026 · 1 citation
6. TONI-NLP at PsyDefDetect: Defense Mechanism Detection via LLM-based Ensemble MethodsBioNLPDurjoy Paul, Arshitha Basavaraj, Callum Chan, et al.2026 · 1 citation
7. CS_Metro at PsyDefDetect: Detecting Psychological Defense Mechanisms in Mental Health Dialogues with Summarization-Enhanced Transformer EnsemblesBioNLPOarisa Rebayet, Radiul Walee, Symom Hossain Shohan, et al.2026 · 1 citation
8. transformer_1376 at PsyDefDetect: A QLoRA-Based Generative Framework for Context-Aware Psychological Defense Mechanism DetectionBioNLPPritha Saha, Shuvodwip Saha, Anik Mahmud Shanto2026 · 1 citation
9. LAMAR-2 at MedGenVidQA 2026: Visual Answer Localization in Medical Videos via Multimodal LLM and Context-Augmented PromptingBioNLPWatcharitpol Sermsrisuwan, Nopporn Lekuthai, Seksan Yoadsanit, et al.2026 · 1 citation
10. CASPAR: A Context-Aware Span Refinement Approach for Decision SupportBioNLPJing Tao, Amir Eskandari, Farhana Zulkernine2026 · 1 citation
11. Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health RecordsBioNLPGuanyu Tao, Siyao Wang, Yong Xue, et al.2026 · 1 citation
12. Seahawk at MedGenVidQA 2026: LLM Segment-Range Selection for Medical Visual Answer LocalizationBioNLPXiaotian Tian, Gulustan Dogan2026 · 1 citation
13. DAL Team at PsyDefDetect: From Supervised Encoders to Hierarchical LLM-RAG for Psychological Defense DetectionBioNLPDuc-Luong Tran, Phuong-Anh Chu, Hoang-Dat Do, et al.2026 · 1 citation
14. VISHC at PsyDefDetect: Mitigating Data Scarcity in Psychological Defense Classification with Context-Aware Synthetic AugmentationBioNLPHoang-Thuy-Duong Vu, Quoc-Cuong Pham, Huy-Hieu Pham2026 · 1 citation
15. Trustworthy NLP for Low-Resource Languages: Agent-Based Uncertainty Modeling for Hebrew Radiology Report StructuringHadas Ben Atya, Naama Gavrielov, Zvi Badash, et al.2026
16. KGRxn-LLM: Knowledge Graph Enhanced Large Language Models for Molecular Reaction ReasoningBioNLPWeichen Liu, Qiyao Xue, Yuyang Wu, et al.2026
17. Systematic Evaluation of the Quality of Synthetic Clinical Notes Rephrased by LLMs at Million-Note ScaleBioNLPJinghui Liu, Sarvesh Soni, Anthony Nguyen2026
18. Effects of Adaptive Pretraining in Specialized Domains for Named Entity RecognitionBioNLPJack Lynam, Sam Henry2026
19. VERICITE: Evaluating Sentence-Level Citation Faithfulness in Retrieval-Augmented Medical Question AnsweringBioNLPYixian Ma, Bohao Chu, Norbert Fuhr2026
20. From Rules to Predictions: Federated Tabular Learning with LLM ReasoningBioNLPAfsaneh Mahanipour, Hana Khamfroush2026
21. AAbAAC: An Annotated Corpus for Autoimmunity Information ExtractionBioNLPFabien Maury, Solène Grosdidier, Maud de Dieuleveult, et al.2026
22. NM at CRF Filling 2026: A Two-Stage LLM Pipeline for Clinical CRF PopulationBioNLPNiccolò Morabito2026
23. FACT: Functional Group Alignment and Consistency in Token Space for Structure-aware Molecular Representation LearningBioNLPHyeonyeong Nam, Woojae Choi, Deok-Joong Lee, et al.2026
24. FHexchange: Resources for Family Health History Extraction and Normalization From Consumer Dialog SourcesBioNLPMichelle Nguyen, Nidhi Soley, Ayah Zirikly, et al.2026
25. IndicMedDialog: A Parallel Multi-Turn Medical Dialogue Dataset for Accessible Healthcare in Indic LanguagesBioNLPShubham Kumar Nigam, Suparnojit Sarkar, Piyush Patel2026
26. MeSHClass-ES and AnatEM-ES: Open Resources for Spanish Biomedical NLPBioNLPSantiago Martinez Novoa, Lina Gomez Mesa, Juan Prieto, et al.2026
27. CoreELM: An Open-Source Framework for Aligning Large Language Models to Embedding SpacesBioNLPBrian Ondov, Chia-Hsuan Chang, Yujia Zhou, et al.2026
28. Probing and Steering Uncertainty in Biomedical Language Models: Representational Structure and Behavioral LimitsBioNLPDebmalya Pal2026
29. Evaluation of Multilingual Text Simplification for the Mental Health Domain: Exploring Small Language ModelsBioNLPOlga Pelloni, Sandra Just, Lars Bongo2026
30. MedCAT v2: a modular, extensible architecture for clinical named entity recognition and linking under real-world privacy and compute constraintsBioNLPMart Ratas, Thomas Searle, Adam Sutton, et al.2026
31. Towards Unified Factuality Evaluation for Biomedical QA and Summarization: Aligning Metrics with Clinical Use-CasesBioNLPMahule Roy, Subhas Roy2026
32. Reliable Automated Triage in Spanish Clinical Notes: A Hybrid Framework for Risk-Aware HIV Suspicion IdentificationBioNLPRodrigo Morales-Sánchez, Soto Montalvo, Raquel Martínez2026
33. A Multi-View Framework for Cross-Domain Nutrition Misinformation Detection in Social MediaBioNLPVishwaa Shah, Indika Kahanda, Andrea Arikawa, et al.2026
34. Do Syntactic Features Help Biomedical Relation Extraction? An Empirical Study of Verb Token and Dependency Graph AugmentationBioNLPMustafa Sikder, Ernest Kwegyir-Afful2026
35. MAX-EVAL-11: A Large Scale Benchmark for Evaluating Large Language Models on Full-Spectrum ICD-11 Medical CodingBioNLPUjjwal Singh, Sarthak Deshwal, Nitish Dube, et al.2026
36. Medical Context Variation: A source of impairment for Event classificationBioNLPAman Sinha, Marianne Clausel, Mathieu Constant, et al.2026
37. Reading Between the Lines: Toward Translating Verbose Patient-authored Messages into Clinician-Formulated QuestionsBioNLPSarvesh Soni, Madeline Bittner, Dina Demner-Fushman2026
38. Expert-Guided Schema-Based Structured Extraction from CONSORT Diagrams Using Vision-Language ModelsBioNLPDamian Stachura, Bartosz Przechera, Monika Opałek, et al.2026
39. Fast, Accurate, and Local Conversion of MIMIC-IV to OMOP with DBTBioNLPAdam Sutton, Niko Moller-Grell, Thomas Searle, et al.2026
40. Gold Label Errors in the SciFact Benchmark: An LLM-Assisted Annotation AuditBioNLPJulien Sylvestre2026
41. CENT: Context Engineering Framework for Normalization of Clinical Trial ProceduresBioNLPSanya Taneja, Ziqing Ji, Hans Verstraete, et al.2026
42. VerbaNexAI at ClinicalSkillQA: From Visual Evidence to Procedural Order A Two-Stage Generative Vision-Language Framework for ClinSkillQABioNLPAndrea Menco Tovar, Jairo E. Serrano, Edwin Puertas, et al.2026
43. CrossDDI: Cross-Source Evidence-Grounded Drug-Drug Interaction VerificationBioNLPHui Wang, Bohao Chu, Norbert Fuhr2026
44. Interpretable ICD Code Classification with Faithful Sentence ExtractionBioNLPYichen Wang, Lian Hong, Masato Mizogaki, et al.2026
45. Training Biomedical Retrievers From Large-Scale Citation ContextsBioNLPXing David Wang, Duy Le Thanh, Ulf Leser2026
46. Post Hoc Agentic Refinement for Improving Precision in Multilingual Clinical Text De-identificationBioNLPJustin Xu, Alistair Johnson, Thomas Lin, et al.2026
47. Treating Decoder-Only LLMs as Encoders: A Simple and Effective Fine-tuning Approach for Named Entity RecognitionBioNLPKen Yano, Hiroya Takamura2026
48. BioTopicXplor: A Web Tool for Interactive Exploration of PubMed Literature through Reproducible Topics.BioNLPLana Yeganova, Donald Comeau, Won Kim, et al.2026
49. When Demographic Sensitivity Isn't What It Seems: Baseline-Aware Counterfactual Audits for Clinical NLPBioNLPHyunwoo Yoo2026
50. Uncertainty-Aware Multi-Label Routing of Clinical Text to Surveillance PathwaysBioNLPAgathe Zecevic, Sebastian Zeki, Angus Roberts2026
51. Towards a Radiologist Imitation Framework for 3D CT Diagnosis with Multimodal LLMsBioNLPKaidi Zhang, Zhiyuan Yan, Gao Cheng, et al.2026

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