🧬 Biochemistry, Genetics and Molecular Biology
Genes, proteins, cells and the chemistry of life.
Subfields
- 🧬Molecular BiologyBiomedical Text Mining and Ontologies · Machine Learning in Bioinformatics82 papers
- 🧬BiophysicsCell Image Analysis Techniques1 paper
- 🧬GeneticsGenomics and Rare Diseases1 paper
Papers
- Highly accurate protein structure prediction with AlphaFoldJohn Jumper, Richard Evans, Alexander Pritzel, et al.2021 · 43,470 citations
- BioBERT: a pre-trained biomedical language representation model for biomedical text miningJinhyuk Lee, Wonjin Yoon, Sungdong Kim, et al.2019 · 8,281 citations
- Domain-Specific Language Model Pretraining for Biomedical Natural Language ProcessingYu Gu; Robert Tinn; Hao Cheng; Michael Lucas; Naoto Usuyama; Xiaodong Liu; Tristan Naumann; Jianfeng Gao;, Hoifung Poon2020 · 2,636 citations
- brat: a Web-based Tool for NLP-Assisted Text AnnotationPontus Stenetorp, Sampo Pyysalo, Goran Topić, et al.2012 · 1,368 citations
- Publicly Available Clinical BERT EmbeddingsEmily Alsentzer, John R. Murphy, Willie Boag, et al.2019 · 1,209 citations
- PubMedQA: A Dataset for Biomedical Research Question AnsweringQiao Jin, Bhuwan Dhingra, Zhengping Liu, et al.2019 · 1,152 citations
- Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking DatasetsYifan Peng, Shankai Yan, Zhiyong Lu2019 · 1,070 citations
- Multi-Task Identification of Entities, Relations, and Coreference for Scientific Knowledge Graph ConstructionYi Luan, Luheng He, Mari Ostendorf, et al.2018 · 933 citations
- U-Net: Convolutional Networks for Biomedical Image SegmentationOlaf Ronneberger, Philipp Fischer, Thomas Brox2015 · 813 citations
- Overview of BioNLP'09 Shared Task on Event ExtractionJin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, et al.2009 · 735 citations
- Introduction to the Bio-entity Recognition Task at JNLPBANigel Collier, Tomoko Ohta, Yoshimasa Tsuruoka, et al.2004 · 731 citations
- Explainable Prediction of Medical Codes from Clinical TextJames Mullenbach, Sarah Wiegreffe, Jon Duke, et al.2018 · 715 citations
- CORD-19: The COVID-19 Open Research DatasetLucy Lu Wang, Kyle Lo, Yoganand Chandrasekhar, et al.2020 · 685 citations
- LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One DayChunyuan Li, Cliff Wong, Sheng Zhang, et al.2023 · 676 citations
- ScispaCy: Fast and Robust Models for Biomedical Natural Language ProcessingMark Neumann, Daniel King, Iz Beltagy, et al.2019 · 674 citations
- Biomedical Named Entity Recognition using Conditional Random Fields and Rich Feature SetsBurr Settles2004 · 600 citations
- Finding Parts in Very Large CorporaMatthew Berland, Eugene Charniak1999 · 560 citations
- Cross-Sentence N-ary Relation Extraction with Graph LSTMsNanyun Peng, Hoifung Poon, Chris Quirk, et al.2017 · 553 citations
- Results of the WNUT2017 Shared Task on Novel and Emerging Entity RecognitionLeon Derczynski, Eric Nichols, Marieke van Erp, et al.2017 · 534 citations
- SemEval-2010 Task 5 : Automatic Keyphrase Extraction from Scientific ArticlesSu Nam Kim, Olena Medelyan, Min-Yen Kan, et al.2010 · 459 citations
- MedMCQA : A Large-scale Multi-Subject Multi-Choice Dataset for Medical domain Question AnsweringAnkit Pal, Logesh Kumar Umapathi, Malaikannan Sankarasubbu2022 · 451 citations
- Large language models are few-shot clinical information extractorsMonica Agrawal, Stefan Hegselmann, Hunter Lang, et al.2022 · 448 citations
- SemEval 2017 Task 10: ScienceIE - Extracting Keyphrases and Relations from Scientific PublicationsIsabelle Augenstein, Mrinal Das, Sebastian Riedel, et al.2017 · 435 citations
- Self-Alignment Pretraining for Biomedical Entity RepresentationsFangyu Liu, Ehsan Shareghi, Zaiqiao Meng, et al.2021 · 432 citations
- The INCEpTION Platform: Machine-Assisted and Knowledge-Oriented Interactive AnnotationJan-Christoph Klie, Michael Bugert, Beto Boullosa, et al.2018 · 422 citations
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