MOLE: Metadata Extraction and Validation in Scientific Papers Using LLMs
Paper · 2025 · Zaid Alyafeai, Maged S. Al-shaibani and Bernard Ghanem
Summary
Datasets in NLP keep multiplying, but much of their descriptive information (license, size, links, domain, tasks) sits unstructured inside papers. Earlier catalogues such as Masader needed manual annotation, and older automatic extractors covered only a handful of fields. MOLE uses LLMs to read a whole paper, in LaTeX or PDF form, and fill in roughly 30 dataset attributes. A JSON schema drives the extraction. For each attribute it gives a question, the allowed options, explanations for unclear options, an output type, a validation group, and minimum and maximum answer lengths. A validation layer then repairs the model's answer by fixing types, snapping invalid options to the closest allowed one, checking length, and cleaning broken JSON. The authors also release a hand-annotated benchmark covering Arabic, English, French, Japanese, Russian and multilingual datasets. They test seven LLMs and vary context length, few-shot examples, input format and web browsing. Gemini 2.5 Pro performs best overall. The results suggest the task is largely automatable, although models still have trouble with strict constraints such as answer length.
Key points
- The schema has 32 attributes for Arabic datasets and is adapted per language. For example, Dialect and Subset are dropped for monolingual non-Arabic sets, and Script options are language-specific.
- The test set has 126 papers, 21 per category, plus 6 papers for validation, giving 7,518 attribute annotations in total. Agreement between the two annotators was 85.93%.
- Every annotation also records whether the value actually appears in the paper. This separates facts that can be read from the text from facts that need browsing.
- Scoring uses F1, with exact match or lenient set matching for lists (one mismatch tolerated). Here precision reflects how often a model hallucinates values that are not present.
- The baselines are Random and Keyword. In the average across validation groups, Gemini 2.5 Pro reaches 76.40, GPT 4o 73.56 and Claude 3.5 Sonnet 72.18, against 48.91 for Keyword.
Interesting ideas
- I1. Each slot is defined as a small contract: a question, a closed option list with glosses for unclear options, a type, and cardinality bounds. This turns free-form extraction into constrained filling that can be checked.
- I2. Instead of discarding a malformed model output, a repair pass casts types, maps off-list answers to the nearest legal option, and fixes JSON with regex rules.
- I3. Gold labels mark whether the answer is actually present in the source document. This lets evaluation separate reading ability from outside knowledge or lookup.
- I4. Trivial baselines (random choice, keyword matching) set a floor, and precision is read as a direct measure of hallucination.
- I5. A "Derived From" field records which seed datasets a resource was built from, which helps reveal contamination.
For Mova
How these ideas could serve Mova, our small open language model — its files, stages and tests:
- I1 (frames): Frame slots from VerbNet roles could carry explicit type, allowed fillers and min/max counts, so an incomplete or overfilled frame is flagged in an explainable way.
- I2 (learn): LLM teacher outputs could be normalized to valid UD relations or role labels before they enter silver data, with each repair logged so it stays traceable.
- I3 (answer): QA on fables and school tests could tag each question as text-stated or requiring world knowledge, so failures are attributed to the reader or to the knowledge base.
- I4 (learn): Each evaluation could include such a naive baseline as a negative control, and report invented content separately from missed content.
- I5 (learn): Tracking the provenance of treebanks and silver corpora would help prevent train/test leakage when sources are mixed or converted between UD dialects.
Institutions
Fields, topics and concepts
📚 Shelves 5The field of science this work belongs to (OpenAlex fields).Computer Science · 16,667 worksArtificial Intelligence · 16,194 worksArts and Humanities · 16,039 worksLanguage and Linguistics · 15,891 worksInformation Systems · 1,437 works
Cite
Cite as Zaid Alyafeai, Maged S. Al-shaibani and Bernard Ghanem. 2025. MOLE: Metadata Extraction and Validation in Scientific Papers Using LLMs. Findings of the Association for Computational Linguistics: EMNLP 2025.
@inproceedings{alyafeai2025mole,
title = {{MOLE: Metadata Extraction and Validation in Scientific Papers Using LLMs}},
author = {Zaid Alyafeai, Maged S. Al-shaibani and Bernard Ghanem},
booktitle = {Findings of the Association for Computational Linguistics: EMNLP 2025},
year = {2025},
doi = {10.18653/v1/2025.findings-emnlp.655},
url = {https://doi.org/10.18653/v1/2025.findings-emnlp.655}
}References
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