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Regina Barzilay — all works

281 works · page 2 of 3 · 101–200 · ← Regina Barzilay

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  1. GraphIE: A Graph-Based Framework for Information Extraction ↗Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers) · no summary yetYujie Qian et al.2019 · 76 citations
  2. Learning to Win by Reading Manuals in a Monte-Carlo Framework ↗Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies · no summary yetS.R.K. Branavan, David Silver, Regina Barzilay2011 · 73 citations
  3. Diffusion models in protein structure and docking ↗Wiley Interdisciplinary Reviews Computational Molecular Science · no summary yetJason Yim et al.2024 · 72 citations
  4. Iterative Refinement Graph Neural Network for Antibody Sequence-Structure Co-design ↗arXiv (Cornell University) · no summary yetWengong Jin et al.2021 · 71 citations
  5. Representation Learning for Grounded Spatial ReasoningTransactions of the Association for Computational Linguistics (TACL)Michael Janner, Karthik Narasimhan, Regina Barzilay2018 · 70 citations
  6. Learning High-Level Planning from Text ↗Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetS.R.K. Branavan et al.2012 · 69 citations
  7. Chapter 11. Junction Tree Variational Autoencoder for Molecular Graph Generation ↗RSC drug discovery/RSC drug discovery series · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2020 · 63 citations
  8. Educating Text Autoencoders: Latent Representation Guidance via Denoising ↗arXiv (Cornell University) · no summary yetTianxiao Shen et al.2019 · 63 citations
  9. Greed is Good if Randomized: New Inference for Dependency Parsing ↗Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP) · no summary yetYuan Zhang et al.2014 · 63 citations
  10. Using Machine Learning and Natural Language Processing to Review and Classify the Medical Literature on Cancer Susceptibility Genes ↗JCO Clinical Cancer Informatics · no summary yetYujia Bao et al.2019 · 62 citations
  11. High-Order Low-Rank Tensors for Semantic Role Labeling ↗Proceedings of the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetTao Lei et al.2015 · 59 citations
  12. GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensembles ↗arXiv (Cornell University) · no summary yetOctavian-Eugen Ganea et al.2021 · 58 citations
  13. Learning Graph Models for Retrosynthesis Prediction ↗arXiv (Cornell University) · no summary yetVignesh Ram Somnath et al.2020 · 58 citations
  14. Consistent Accelerated Inference via Confident Adaptive Transformers ↗Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing · no summary yetTal Schuster et al.2021 · 56 citations
  15. Randomized Greedy Inference for Joint Segmentation, POS Tagging and Dependency Parsing ↗Proceedings of the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetYuan Zhang et al.2015 · 55 citations
  16. From Natural Language Specifications to Program Input Parsers ↗Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetTao Lei et al.2013 · 55 citations
  17. Modeling Syntactic Context Improves Morphological Segmentation ↗Proceedings of the Fifteenth Conference on Computational Natural Language Learning · no summary yetYoong Keok Lee, Aria Haghighi, Regina Barzilay2011 · 55 citations
  18. Making Sense of Sound: Unsupervised Topic Segmentation over Acoustic Input ↗Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics · no summary yetIgor Malioutov et al.2007 · 55 citations
  19. Content Modeling Using Latent Permutations ↗Journal of Artificial Intelligence Research · no summary yetHarr Chen et al.2009 · 54 citations
  20. The three pillars of machine programming ↗no summary yetJustin Gottschlich et al.2018 · 53 citations
  21. Finding temporal order in discharge summaries. ↗PubMed · no summary yetPhilip Bramsen et al.2006 · 53 citations
  22. Morphological Segmentation for Keyword Spotting ↗Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP) · no summary yetKarthik Narasimhan et al.2014 · 52 citations
  23. Multi-Event Extraction Guided by Global Constraints ↗Proceedings of the 2012 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetRoi Reichart, Regina Barzilay2012 · 52 citations
  24. Database-text alignment via structured multilabel classification ↗no summary yetBenjamin Snyder, Regina Barzilay2007 · 52 citations
  25. Automatically Generating Wikipedia Articles: A Structure-Aware Approach ↗Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP · no summary yetChristina Sauper, Regina Barzilay2009 · 51 citations
  26. Automatic Aggregation by Joint Modeling of Aspects and Values ↗Journal of Artificial Intelligence Research · no summary yetChristina Sauper, Regina Barzilay2013 · 50 citations
  27. Simple Type-Level Unsupervised POS Tagging ↗Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing · no summary yetYoong Keok Lee, Aria Haghighi, Regina Barzilay2010 · 49 citations
  28. Conformal Language Modeling ↗arXiv:2306.10193 · no summary yetVictor Quach et al.2023 · 48 citations
  29. Steps to Excellence: Simple Inference with Refined Scoring of Dependency Trees ↗Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetYuan Zhang et al.2014 · 48 citations
  30. Exploring Compositional Architectures and Word Vector Representations for Prepositional Phrase AttachmentYonatan Belinkov, Tao Lei, Regina Barzilay, et al.English · 45 citations
  31. Neural Decipherment via Minimum-Cost Flow: From Ugaritic to Linear BJiaming Luo, Yuan Cao, Regina BarzilayAncient Hebrew · 44 citations
  32. External Validation of a Deep Learning Model for Predicting Mammographic Breast Density in Routine Clinical Practice ↗Academic Radiology · no summary yetBrian Nicholas Dontchos et al.2019 · 41 citations
  33. Incorporating Content Structure into Text Analysis Applications ↗Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing · no summary yetChristina Sauper, Aria Haghighi, Regina Barzilay2010 · 40 citations
  34. Artificial Intelligence and Machine Learning in Lung Cancer Screening ↗Thoracic surgery clinics/Thorac. surg. clin. · no summary yetScott Adams et al.2023 · 39 citations
  35. Columbia University at DUC 2004 ↗no summary yetKathleen R. McKeown et al.2004 · 39 citations
  36. Verbalization of high-level formal proofs ↗no summary yetAmanda M. Holland-Minkley, Regina Barzilay, Robert L. Constable1999 · 39 citations
  37. Deep learning enhances the prediction of HLA class I-presented CD8+ T cell epitopes in foreign pathogens ↗Nature Machine Intelligence · no summary yetJeremy Wohlwend et al.2025 · 38 citations
  38. Path-Augmented Graph Transformer Network ↗ChemRxiv · no summary yetBenson Chen, Regina Barzilay, Tommi Jaakkola2019 · 37 citations
  39. Deep Learning Model to Assess Cancer Risk on the Basis of a Breast MR Image Alone ↗American Journal of Roentgenology · no summary yetTally Portnoi et al.2019 · 36 citations
  40. Deriving Neural Architectures from Sequence and Graph Kernels ↗arXiv (Cornell University) · no summary yetTao Lei et al.2017 · 36 citations
  41. Cross-lingual propagation for morphological analysis ↗no summary yetBenjamin Snyder, Regina Barzilay2008 · 35 citations
  42. A New Approach to Expert System Explanations ↗Natural Language Generation · no summary yetRegina Barzilay et al.1998 · 35 citations
  43. Learning to Make Generalizable and Diverse Predictions for Retrosynthesis ↗arXiv (Cornell University) · no summary yetBenson Chen et al.2019 · 34 citations
  44. AI-driven discovery of synergistic drug combinations against pancreatic cancer ↗Nature Communications · no summary yetMohsen Pourmousa et al.2025 · 33 citations
  45. RxnScribe: A Sequence Generation Model for Reaction Diagram Parsing ↗Journal of Chemical Information and Modeling · no summary yetYujie Qian et al.2023 · 33 citations
  46. Validation of a Semiautomated Natural Language Processing–Based Procedure for Meta-Analysis of Cancer Susceptibility Gene Penetrance ↗JCO Clinical Cancer Informatics · no summary yetZhengyi Deng et al.2019 · 33 citations
  47. Machine learning to parse breast pathology reports in Chinese ↗Breast Cancer Research and Treatment · no summary yetRong Tang et al.2018 · 33 citations
  48. In-domain Relation Discovery with Meta-constraints via Posterior Regularization ↗Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies · no summary yetHarr Chen et al.2011 · 33 citations
  49. OpenChemIE: An Information Extraction Toolkit for Chemistry Literature ↗Journal of Chemical Information and Modeling · no summary yetVincent Fan et al.2024 · 32 citations
  50. Learning to Map into a Universal POS Tagset ↗Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning · no summary yetYuan Zhang et al.2012 · 32 citations
  51. Using Semantic Cues to Learn Syntax ↗Proceedings of the AAAI Conference on Artificial Intelligence · no summary yetTahira Naseem, Regina Barzilay2011 · 32 citations
  52. Fast protein backbone generation with SE(3) flow matching ↗arXiv (Cornell University) · no summary yetJason Yim et al.2023 · 30 citations
  53. Unsupervised Morphology Rivals Supervised Morphology for Arabic MTDavid Stallard, Jacob Devlin, Michael Kayser, et al.Semitic languages · 30 citations
  54. DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models ↗arXiv (Cornell University) · no summary yetMohamed Amine Ketata et al.2023 · 29 citations
  55. Deciphering Undersegmented Ancient Scripts Using Phonetic PriorJiaming Luo, Frederik Hartmann, Enrico Santus, et al.Semitic languages · 29 citations
  56. Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking ↗arXiv (Cornell University) · no summary yetOctavian-Eugen Ganea et al.2021 · 29 citations
  57. Can machine learning improve patient selection for cardiac resynchronization therapy? ↗PLoS ONE · no summary yetSzu-Yeu Hu et al.2019 · 29 citations
  58. Are Learned Molecular Representations Ready for Prime Time? ↗ChemRxiv · no summary yetKevin Yang et al.2019 · 29 citations
  59. Deep Confident Steps to New Pockets: Strategies for Docking Generalization ↗PubMed · no summary yetGabriele Corso et al.2024 · 28 citations
  60. Pathologic findings in reduction mammoplasty specimens: a surrogate for the population prevalence of breast cancer and high-risk lesions ↗Breast Cancer Research and Treatment · no summary yetFrancisco Acevedo C et al.2018 · 28 citations
  61. Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design ↗PubMed · no summary yetCampbell, Andrew et al.2024 · 27 citations
  62. Generating a Table-of-Contents ↗Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics · no summary yetS. R. K. Branavan, Pawan Deshpande, Regina Barzilay2007 · 27 citations
  63. Optimal Transport Graph Neural Networks ↗arXiv (Cornell University) · no summary yetBenson Chen et al.2020 · 23 citations
  64. Incremental Text Structuring with Online Hierarchical Ranking ↗Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL) · no summary yetErdong Chen, Benjamin Snyder, Regina Barzilay2007 · 23 citations
  65. Evaluation of a prototype machine learning tool to semi-automate data extraction for systematic literature reviews ↗Systematic Reviews · no summary yetAntonia Panayi et al.2023 · 22 citations
  66. Hierarchical Graph-to-Graph Translation for Molecules ↗arXiv (Cornell University) · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2019 · 22 citations
  67. CapWAP: Image Captioning with a Purpose ↗Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing (EMNLP) · no summary yetAdam Fisch et al.2020 · 21 citations
  68. Randomized Decoding for Selection-and-Ordering Problems ↗Human Language Technologies 2007: The Conference of the North American Chapter of the Association for Computational Linguistics; Proceedings of the Main Conference · no summary yetPawan Deshpande, Regina Barzilay, David Karger2007 · 21 citations
  69. Predictive Chemistry Augmented with Text Retrieval ↗Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing · no summary yetYujie Qian et al.2023 · 19 citations
  70. Atypical ductal hyperplasia in men with gynecomastia: what is their breast cancer risk? ↗Breast Cancer Research and Treatment · no summary yetSuzanne B. Coopey et al.2019 · 19 citations
  71. Discovery and artificial intelligence-guided mechanistic elucidation of a narrow-spectrum antibiotic ↗Nature Microbiology · no summary yetDenise B. Catacutan et al.2025 · 18 citations
  72. Influenza vaccine strain selection with an AI-based evolutionary and antigenicity model ↗Nature Medicine · no summary yetWenxian Shi et al.2025 · 18 citations
  73. The Columbia Multi-Document Summarizer for DUC 2002 ↗no summary yetKathleen R. McKeown et al.2002 · 18 citations
  74. Adding More Languages Improves Unsupervised Multilingual Part-of-Speech Tagging: a Bayesian Non-Parametric Approach ↗Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics · no summary yetBenjamin Snyder et al.2009 · 17 citations
  75. Unsupervised Learning of Morphological Forests ↗Transactions of the Association for Computational Linguistics · no summary yetJiaming Luo, Karthik Narasimhan, Regina Barzilay2017 · 16 citations
  76. Incidental breast carcinoma: incidence, management, and outcomes in 4804 bilateral reduction mammoplasties ↗Breast Cancer Research and Treatment · no summary yetRong Tang et al.2019 · 15 citations
  77. Dirichlet Flow Matching with Applications to DNA Sequence Design ↗PubMed · no summary yetStark, Hannes et al.2024 · 14 citations
  78. Blind protein-ligand docking with diffusion-based deep generative models ↗Biophysical Journal · no summary yetGabriele Corso et al.2022 · 13 citations
  79. Improving Molecular Design by Stochastic Iterative Target Augmentation ↗ChemRxiv · no summary yetKevin Yang et al.2020 · 13 citations
  80. Improved motif-scaffolding with SE(3) flow matching ↗PubMed · no summary yetJason Yim et al.2024 · 12 citations
  81. Antibody-Antigen Docking and Design via Hierarchical Equivariant Refinement ↗arXiv (Cornell University) · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2022 · 12 citations
  82. Nutri-bullets Hybrid: Consensual Multi-document Summarization ↗Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetDarsh Shah et al.2021 · 12 citations
  83. Do Neural Information Extraction Algorithms Generalize Across Institutions? ↗JCO Clinical Cancer Informatics · no summary yetEnrico Santus et al.2019 · 12 citations
  84. Learning to refine text based recommendations ↗Proceedings of the 2016 Conference on Empirical Methods in Natural Language Processing · no summary yetYouyang Gu et al.2016 · 12 citations
  85. Conformal Prediction Sets with Limited False Positives ↗arXiv (Cornell University) · no summary yetFisch, Adam et al.2022 · 11 citations
  86. Few-shot Conformal Prediction with Auxiliary Tasks ↗arXiv (Cornell University) · no summary yetFisch, Adam et al.2021 · 10 citations
  87. Multi-Resolution Autoregressive Graph-to-Graph Translation for Molecules ↗ChemRxiv · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2019 · 10 citations
  88. Nutribullets Hybrid: Multi-document Health Summarization ↗arXiv (Cornell University) · no summary yetDarsh Shah et al.2021 · 9 citations
  89. Domain Extrapolation via Regret Minimization. ↗arXiv (Cornell University) · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2020 · 9 citations
  90. Deep Transfer in Reinforcement Learning by Language Grounding. ↗arXiv (Cornell University) · no summary yetKarthik Narasimhan, Regina Barzilay, Tommi Jaakkola2017 · 9 citations
  91. Gesture in automatic discourse processing ↗no summary yetRegina Barzilay, Randall Davis, Jacob Eisenstein2008 · 9 citations
  92. Turning lectures into comic books using linguistically salient gestures ↗no summary yetJacob Eisenstein, Regina Barzilay, Randall Davis2007 · 9 citations
  93. Automatic processing of spoken dialogue in the home hemodialysis domain. ↗PubMed · no summary yetRonilda C. Lacson, Regina Barzilay2005 · 9 citations
  94. CLIPZyme: Reaction-Conditioned Virtual Screening of Enzymes ↗arXiv (Cornell University) · no summary yetPeter G. Mikhael, Itamar Chinn, Regina Barzilay2024 · 8 citations
  95. Predict then Interpolate: A Simple Algorithm to Learn Stable Classifiers ↗arXiv (Cornell University) · no summary yetYujia Bao, Shiyu Chang, Regina Barzilay2021 · 8 citations
  96. CapWAP: Captioning with a Purpose ↗arXiv (Cornell University) · no summary yetFisch, Adam et al.2020 · 8 citations
  97. Exploiting Rules to Enhance Machine Learning in Extracting Information From Multi-Institutional Prostate Pathology Reports ↗JCO Clinical Cancer Informatics · no summary yetEnrico Santus et al.2020 · 8 citations
  98. Gestural Cohesion for Topic Segmentation ↗Proceedings of ACL-08: HLT · no summary yetJacob Eisenstein, Regina Barzilay, Randall Davis2008 · 8 citations
  99. Columbia at the Document Understanding Conference 2003 ↗no summary yetKathleen R. McKeown et al.2003 · 8 citations
  100. Particle Guidance: non-I.I.D. Diverse Sampling with Diffusion Models ↗arXiv (Cornell University) · no summary yetGabriele Corso et al.2023 · 7 citations

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