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Regina Barzilay — all works

281 works · page 1 of 3 · 1–100 · ← Regina Barzilay

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  1. De novo design of protein structure and function with RFdiffusion ↗Nature · no summary yetJoseph L. Watson et al.2023 · 2,342 citations
  2. Analyzing Learned Molecular Representations for Property Prediction ↗Journal of Chemical Information and Modeling · no summary yetKevin Yang et al.2019 · 1,932 citations
  3. Using Lexical Chains for Text SummarizationIntelligent Scalable Text SummarizationRegina Barzilay, Michael Elhadad1997 · 992 citations
  4. Style Transfer from Non-Parallel Text by Cross-AlignmentTianxiao Shen, Tao Lei, Regina Barzilay, et al.Machine translation · 979 citations
  5. Rationalizing Neural PredictionsConference on Empirical Methods in Natural Language Processing (EMNLP)Tao Lei, Regina Barzilay, Tommi Jaakkola2016 · 949 citations
  6. Modeling Local Coherence: An Entity-Based ApproachComputational LinguisticsRegina Barzilay, Mirella Lapata2008 · 917 citations
  7. Junction Tree Variational Autoencoder for Molecular Graph Generation ↗arXiv (Cornell University) · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2018 · 777 citations
  8. A Deep Learning Mammography-based Model for Improved Breast Cancer Risk Prediction ↗Radiology · no summary yetAdam Yala et al.2019 · 758 citations
  9. Extracting Paraphrases from a Parallel CorpusRegina Barzilay, Kathleen R. McKeownMachine translation · 692 citations
  10. Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction ↗bioRxiv (Cold Spring Harbor Laboratory) · no summary yetSaro Passaro et al.2025 · 674 citations
  11. Learning to Paraphrase: An Unsupervised Approach Using Multiple-Sequence AlignmentRegina Barzilay, Lillian LeeMachine translation · 622 citations
  12. Sentence Fusion for Multidocument News SummarizationComputational LinguisticsRegina Barzilay, Kathleen R. McKeown2005 · 549 citations
  13. Learning to Automatically Solve Algebra Word Problems ↗Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetNate Kushman et al.2014 · 493 citations
  14. Boltz-1 Democratizing Biomolecular Interaction Modeling ↗bioRxiv (Cold Spring Harbor Laboratory) · no summary yetJeremy Wohlwend et al.2024 · 491 citations
  15. Information Fusion in the Context of Multi-Document SummarizationAnnual Meeting of the Association for Computational Linguistics (ACL)Regina Barzilay, Kathleen R. McKeown, Michael Elhadad1999 · 482 citations
  16. Convolutional Embedding of Attributed Molecular Graphs for Physical Property Prediction ↗Journal of Chemical Information and Modeling · no summary yetConnor W. Coley et al.2017 · 477 citations
  17. Graph neural networks ↗Nature Reviews Methods Primers · no summary yetGabriele Corso et al.2024 · 457 citations
  18. Catching the Drift: Probabilistic Content Models, with Applications to Generation and SummarizationConference of the North American Chapter of the Association for Computational Linguistics (NAACL)Regina Barzilay, Lillian Lee2004 · 417 citations
  19. Inferring Strategies for Sentence Ordering in Multidocument News Summarization ↗Journal of Artificial Intelligence Research · no summary yetRegina Barzilay, Noémie Elhadad2002 · 394 citations
  20. Applications of Deep Learning in Molecule Generation and Molecular Property Prediction ↗Accounts of Chemical Research · no summary yetW. Patrick Walters, Regina Barzilay2020 · 386 citations
  21. Language Understanding for Text-based Games Using Deep Reinforcement LearningConference on Empirical Methods in Natural Language Processing (EMNLP)Karthik Narasimhan, Tejas Kulkarni, Regina Barzilay2015 · 380 citations
  22. Multiple Aspect Ranking Using the Good Grief Algorithm ↗Human Language Technologies 2007: The Conference of the North American Chapter of the Association for Computational Linguistics; Proceedings of the Main Conference · no summary yetBenjamin Snyder, Regina Barzilay2007 · 356 citations
  23. DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking ↗arXiv (Cornell University) · no summary yetGabriele Corso et al.2022 · 355 citations
  24. Deep learning-guided discovery of an antibiotic targeting Acinetobacter baumannii ↗Nature Chemical Biology · no summary yetGary Liu et al.2023 · 353 citations
  25. Reinforcement Learning for Mapping Instructions to Actions ↗Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP · no summary yetS.R.K. Branavan et al.2009 · 340 citations
  26. Uncertainty Quantification Using Neural Networks for Molecular Property Prediction ↗Journal of Chemical Information and Modeling · no summary yetLior Hirschfeld et al.2020 · 339 citations
  27. IJCAI'05 Proceedings of the 19th international joint conference on Artificial intelligence ↗no summary yetMirella Lapata, Regina Barzilay2005 · 333 citations
  28. Paraphrasing for Automatic EvaluationConference of the North American Chapter of the Association for Computational Linguistics (NAACL)David Kauchak, Regina Barzilay2006 · 323 citations
  29. Towards Debiasing Fact Verification ModelsConference on Empirical Methods in Natural Language Processing (EMNLP)Tal Schuster, Darsh Shah, Yun Jie Serene Yeo, et al.2019 · 301 citations
  30. Cross-Lingual Alignment of Contextual Word Embeddings, with Applications to Zero-shot Dependency ParsingConference of the North American Chapter of the Association for Computational Linguistics (NAACL)Tal Schuster, Ori Ram, Regina Barzilay, et al.2019 · 298 citations
  31. Bayesian Unsupervised Topic SegmentationConference on Empirical Methods in Natural Language Processing (EMNLP)Jacob Eisenstein, Regina Barzilay2008 · 298 citations
  32. Mammographic Breast Density Assessment Using Deep Learning: Clinical Implementation ↗Radiology · no summary yetConstance Dobbins Lehman et al.2018 · 295 citations
  33. Get Your Vitamin C! Robust Fact Verification with Contrastive EvidenceConference of the North American Chapter of the Association for Computational Linguistics (NAACL)Tal Schuster, Adam Fisch, Regina Barzilay2021 · 290 citations
  34. Toward robust mammography-based models for breast cancer risk ↗Science Translational Medicine · no summary yetAdam Yala et al.2021 · 281 citations
  35. Sentence Alignment for Monolingual Comparable CorporaConference on Empirical Methods in Natural Language Processing (EMNLP)Regina Barzilay, Noemie Elhadad2003 · 281 citations
  36. Minimum Cut Model for Spoken Lecture SegmentationAnnual Meeting of the Association for Computational Linguistics (ACL)Igor Malioutov, Regina Barzilay2006 · 271 citations
  37. Collective Content Selection for Concept-to-Text GenerationHuman Language Technology Conference (HLT)Regina Barzilay, Mirella Lapata2005 · 262 citations
  38. Automatic evaluation of text coherence: models and representations ↗no summary yetMirella Lapata, Regina Barzilay2005 · 251 citations
  39. Current and Future Roles of Artificial Intelligence in Medicinal Chemistry Synthesis ↗Journal of Medicinal Chemistry · no summary yetThomas J. Struble et al.2020 · 245 citations
  40. Selective Sharing for Multilingual Dependency ParsingAnnual Meeting of the Association for Computational Linguistics (ACL)Tahira Naseem, Regina Barzilay, Amir Globerson2012 · 238 citations
  41. Towards multidocument summarization by reformulation: progress and prospects ↗no summary yetKathleen R. McKeown et al.1999 · 228 citations
  42. Unsupervised Multilingual Learning for Morphological SegmentationAnnual Meeting of the Association for Computational Linguistics (ACL)Benjamin Snyder, Regina Barzilay2008 · 222 citations
  43. Summarization evaluation methods: Experiments and analysis ↗Columbia Academic Commons (Columbia University) · no summary yetKathleen R. McKeown et al.1998 · 218 citations
  44. A Deep Learning Model to Triage Screening Mammograms: A Simulation Study ↗Radiology · no summary yetAdam Yala et al.2019 · 210 citations
  45. Multi-Source Domain Adaptation with Mixture of Experts ↗Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing · no summary yetJiang Guo, Darsh Shah, Regina Barzilay2018 · 210 citations
  46. Event Discovery in Social Media Feeds ↗Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies · no summary yetEdward Benson, Aria Haghighi, Regina Barzilay2011 · 209 citations
  47. Simfinder: A flexible clustering tool for summarization ↗no summary yetVasileios Hatzivassiloglou et al.2001 · 207 citations
  48. Multi-Institutional Validation of a Mammography-Based Breast Cancer Risk Model ↗Journal of Clinical Oncology · no summary yetAdam Yala et al.2021 · 203 citations
  49. Using Universal Linguistic Knowledge to Guide Grammar InductionConference on Empirical Methods in Natural Language Processing (EMNLP)Tahira Naseem, Harr Chen, Regina Barzilay, et al.2010 · 201 citations
  50. Predicting Organic Reaction Outcomes with Weisfeiler-Lehman Network ↗arXiv (Cornell University) · no summary yetWengong Jin et al.2017 · 184 citations
  51. Improving Information Extraction by Acquiring External Evidence with Reinforcement Learning ↗Proceedings of the 2016 Conference on Empirical Methods in Natural Language Processing · no summary yetKarthik Narasimhan, Adam Yala, Regina Barzilay2016 · 183 citations
  52. High-Risk Breast Lesions: A Machine Learning Model to Predict Pathologic Upgrade and Reduce Unnecessary Surgical Excision ↗Radiology · no summary yetManisha Bahl et al.2017 · 180 citations
  53. Few-shot Text Classification with Distributional Signatures ↗arXiv (Cornell University) · no summary yetYujia Bao et al.2019 · 175 citations
  54. Recent progress in the MIT spoken lecture processing project ↗Interspeech (USB) · no summary yetJames Glass et al.2007 · 171 citations
  55. Low-Rank Tensors for Scoring Dependency Structures ↗Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetTao Lei et al.2014 · 162 citations
  56. Inferring Which Medical Treatments Work from Reports of Clinical TrialsConference of the North American Chapter of the Association for Computational Linguistics (NAACL)Eric Lehman, Jay DeYoung, Regina Barzilay, et al.2019 · 160 citations
  57. Molding CNNs for text: non-linear, non-consecutive convolutions ↗Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing · no summary yetTao Lei, Regina Barzilay, Tommi Jaakkola2015 · 156 citations
  58. Ten Pairs to Tag – Multilingual POS Tagging via Coarse Mapping between Embeddings ↗Proceedings of the 2016 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetYuan Zhang et al.2016 · 153 citations
  59. The Limitations of Stylometry for Detecting Machine-Generated Fake NewsComputational LinguisticsTal Schuster, Roei Schuster, Darsh J. Shah, et al.2020 · 151 citations
  60. Columbia Multi-Document Summarization: Approach and Evaluation ↗no summary yetKathleen R. McKeown et al.2001 · 145 citations
  61. Using deep learning for dermatologist-level detection of suspicious pigmented skin lesions from wide-field images ↗Science Translational Medicine · no summary yetLuis R. Soenksen et al.2021 · 144 citations
  62. Modeling local coherence ↗Annual Meeting of the Association for Computational Linguistics (ACL) · no summary yetRegina Barzilay, Mirella Lapata2005 · 142 citations
  63. Inducing Temporal Graphs ↗Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing · no summary yetPhilip Bramsen et al.2006 · 136 citations
  64. Deriving Machine Attention from Human Rationales ↗Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing · no summary yetYujia Bao et al.2018 · 130 citations
  65. Learning Multimodal Graph-to-Graph Translation for Molecular Optimization ↗arXiv (Cornell University) · no summary yetWengong Jin et al.2018 · 130 citations
  66. Reading between the Lines: Learning to Map High-Level Instructions to Commands ↗Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics · no summary yetS.R.K. Branavan, Luke Zettlemoyer, Regina Barzilay2010 · 130 citations
  67. Semi-supervised Question Retrieval with Gated Convolutions ↗Proceedings of the 2016 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetTao Lei et al.2016 · 129 citations
  68. sk_p: a neural program corrector for MOOCs ↗ACM SIGPLAN International Conference on Systems, Programming, Languages, and Applications: Software for Humanity (SPLASH) · no summary yetYewen Pu et al.2016 · 121 citations
  69. Unsupervised Multilingual Grammar Induction ↗Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP · no summary yetBenjamin Snyder, Tahira Naseem, Regina Barzilay2009 · 119 citations
  70. Automated Chemical Reaction Extraction from Scientific Literature ↗Journal of Chemical Information and Modeling · no summary yetJiang Hong Guo et al.2021 · 118 citations
  71. Atom-level enzyme active site scaffolding using RFdiffusion2 ↗Nature Methods · no summary yetWoody Ahern et al.2025 · 116 citations
  72. Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem ↗arXiv (Cornell University) · no summary yetBrian L. Trippe et al.2022 · 114 citations
  73. Aspect-augmented Adversarial Networks for Domain Adaptation ↗Transactions of the Association for Computational Linguistics · no summary yetYuan Zhang, Regina Barzilay, Tommi Jaakkola2017 · 114 citations
  74. Using Semantic Unification to Generate Regular Expressions from Natural Language ↗Proceedings of the 2013 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetNate Kushman, Regina Barzilay2013 · 113 citations
  75. Bootstrapping Lexical Choice via Multiple-Sequence Alignment ↗Proceedings of the 2002 Conference on Empirical Methods in Natural Language Processing (EMNLP 2002) · no summary yetRegina Barzilay, Lillian Lee2002 · 113 citations
  76. Aggregation via Set Partitioning for Natural Language Generation ↗Proceedings of the Human Language Technology Conference of the NAACL, Main Conference · no summary yetRegina Barzilay, Mirella Lapata2006 · 109 citations
  77. Critical assessment of AI in drug discovery ↗Expert Opinion on Drug Discovery · no summary yetW. Patrick Walters, Regina Barzilay2021 · 106 citations
  78. Information fusion for multidocument summarization: paraphrasing and generation ↗no summary yetKathleen R. McKeown, Regina Barzilay2003 · 106 citations
  79. Sentence Ordering in Multidocument Summarization ↗Proceedings of the First International Conference on Human Language Technology Research · no summary yetRegina Barzilay, Noemie Elhadad, Kathleen R. McKeown2001 · 106 citations
  80. Crystal Diffusion Variational Autoencoder for Periodic Material Generation ↗arXiv (Cornell University) · no summary yetTian Xie et al.2021 · 105 citations
  81. Hierarchical Low-Rank Tensors for Multilingual Transfer ParsingConference on Empirical Methods in Natural Language Processing (EMNLP)Yuan Zhang, Regina Barzilay2015 · 103 citations
  82. Global Models of Document Structure using Latent Permutations ↗Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics · no summary yetHarr Chen et al.2009 · 103 citations
  83. The Rules Behind Roles: Identifying speaker role in radio broadcasts ↗no summary yetRegina Barzilay et al.2000 · 102 citations
  84. Unsupervised Multilingual Learning for POS Tagging ↗Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing · no summary yetBenjamin Snyder et al.2008 · 101 citations
  85. EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction ↗arXiv (Cornell University) · no summary yetStärk, Hannes et al.2022 · 98 citations
  86. Neural Generation of Regular Expressions from Natural Language with Minimal Domain Knowledge ↗Proceedings of the 2016 Conference on Empirical Methods in Natural Language Processing · no summary yetNicholas Locascio et al.2016 · 97 citations
  87. Hierarchical Generation of Molecular Graphs using Structural Motifs ↗arXiv (Cornell University) · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2020 · 96 citations
  88. Machine Comprehension with Discourse RelationsAnnual Meeting of the Association for Computational Linguistics (ACL)Karthik Narasimhan, Regina Barzilay2015 · 92 citations
  89. A Statistical Model for Lost Language Decipherment ↗Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics · no summary yetBenjamin Snyder, Regina Barzilay, Kevin Knight2010 · 92 citations
  90. MolScribe: Robust Molecular Structure Recognition with Image-to-Graph Generation ↗Journal of Chemical Information and Modeling · no summary yetYujie Qian et al.2023 · 90 citations
  91. Torsional Diffusion for Molecular Conformer Generation ↗arXiv (Cornell University) · no summary yetBowen Jing et al.2022 · 89 citations
  92. Multi-Objective Molecule Generation using Interpretable Substructures ↗arXiv (Cornell University) · no summary yetWengong Jin, Regina Barzilay, Tommi Jaakkola2020 · 89 citations
  93. An Unsupervised Method for Uncovering Morphological Chains ↗Transactions of the Association for Computational Linguistics · no summary yetKarthik Narasimhan, Regina Barzilay, Tommi Jaakkola2015 · 88 citations
  94. SE(3) diffusion model with application to protein backbone generation ↗arXiv (Cornell University) · no summary yetJason Yim et al.2023 · 85 citations
  95. Content Models with Attitude ↗Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies · no summary yetChristina Sauper, Aria Haghighi, Regina Barzilay2011 · 85 citations
  96. Machine Learning Methods to Extract Documentation of Breast Cancer Symptoms From Electronic Health Records ↗Journal of Pain and Symptom Management · no summary yetAlexander W. Forsyth et al.2018 · 84 citations
  97. Learning Document-Level Semantic Properties from Free-Text Annotations ↗Proceedings of ACL-08: HLT · no summary yetS.R.K. Branavan et al.2008 · 81 citations
  98. Data used for training in "EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction" ↗Zenodo (CERN European Organization for Nuclear Research) · no summary yetHannes Stark et al.2022 · 79 citations
  99. Multilingual Part-of-Speech Tagging: Two Unsupervised Approaches ↗Journal of Artificial Intelligence Research · no summary yetTahira Naseem et al.2009 · 79 citations
  100. Blank Language Models ↗Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing (EMNLP) · no summary yetTianxiao Shen et al.2020 · 78 citations

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