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Hoifung Poon — all works

142 works · page 1 of 2 · 1–100 · ← Hoifung Poon

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  1. Domain-Specific Language Model Pretraining for Biomedical Natural Language ProcessingarXiv:2007.15779Yu Gu; Robert Tinn; Hao Cheng; Michael Lucas; Naoto Usuyama; Xiaodong Liu; Tristan Naumann; Jianfeng Gao;, Hoifung Poon2020 · 2,674 citations
  2. BioGPT: generative pre-trained transformer for biomedical text generation and mining ↗Briefings in Bioinformatics · no summary yetRenqian Luo et al.2022 · 1,342 citations
  3. Representing Text for Joint Embedding of Text and Knowledge BasesConference on Empirical Methods in Natural Language Processing (EMNLP)Kristina Toutanova, Danqi Chen, Patrick Pantel, et al.2015 · 907 citations
  4. A whole-slide foundation model for digital pathology from real-world data ↗Nature · no summary yetHanwen Xu et al.2024 · 904 citations
  5. LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One DayConference on Neural Information Processing Systems (NeurIPS)Chunyuan Li, Cliff Wong, Sheng Zhang, et al.2023 · 692 citations
  6. Cross-Sentence N-ary Relation Extraction with Graph LSTMsTransactions of the Association for Computational Linguistics (TACL)Nanyun Peng, Hoifung Poon, Chris Quirk, et al.2017 · 557 citations
  7. Sum-Product Networks: A New Deep Architecture ↗arXiv (Cornell University) · no summary yetHoifung Poon, Pedro Domingos2012 · 379 citations
  8. Unsupervised Semantic ParsingConference on Empirical Methods in Natural Language Processing (EMNLP)Hoifung Poon, Pedro Domingos2009 · 346 citations
  9. Distant Supervision for Relation Extraction beyond the Sentence BoundaryConference of the European Chapter of the Association for Computational Linguistics (EACL)Chris Quirk, Hoifung Poon2017 · 321 citations
  10. Making the Most of Text Semantics to Improve Biomedical Vision–Language Processing ↗Lecture notes in computer science · no summary yetBenedikt Boecking et al.2022 · 312 citations
  11. Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine ↗arXiv:2311.16452 · no summary yetHarsha Nori et al.2023 · 296 citations
  12. A Multimodal Biomedical Foundation Model Trained from Fifteen Million Image–Text Pairs ↗NEJM AI · no summary yetSheng Zhang et al.2024 · 280 citations
  13. Joint Unsupervised Coreference Resolution with Markov LogicConference on Empirical Methods in Natural Language Processing (EMNLP)Hoifung Poon, Pedro Domingos2008 · 273 citations
  14. Joint inference in information extraction ↗no summary yetHoifung Poon, Pedro Domingos2007 · 260 citations
  15. Neural-Symbolic Learning and Reasoning: A Survey and Interpretation ↗arXiv (Cornell University) · no summary yetTarek R. Besold et al.2017 · 258 citations
  16. Sound and efficient inference with probabilistic and deterministic dependencies ↗no summary yetHoifung Poon, Pedro Domingos2006 · 250 citations
  17. Classification of common human diseases derived from shared genetic and environmental determinants ↗Nature Genetics · no summary yetKanix Wang et al.2017 · 242 citations
  18. Unsupervised Morphological Segmentation with Log-Linear ModelsConference of the North American Chapter of the Association for Computational Linguistics (NAACL)Hoifung Poon, Colin Cherry, Kristina Toutanova2009 · 210 citations
  19. Fine-tuning large neural language models for biomedical natural language processing ↗Patterns · no summary yetRobert Tinn et al.2021 · 198 citations
  20. Document-Level N-ary Relation Extraction with Multiscale Representation Learning ↗Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers) · no summary yetRobin Jia, Cliff Wong, Hoifung Poon2019 · 177 citations
  21. Compositional Learning of Embeddings for Relation Paths in Knowledge Base and Text ↗Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetKristina Toutanova et al.2016 · 162 citations
  22. Context-faithful Prompting for Large Language ModelsFindings of the Association for Computational LinguisticsWenxuan Zhou, Sheng Zhang, Hoifung Poon, et al.2023 · 148 citations
  23. Adversarial Training for Large Neural Language Models ↗arXiv (Cornell University) · no summary yetXiaodong Liu et al.2020 · 148 citations
  24. BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs ↗arXiv (Cornell University) · no summary yetSheng Zhang et al.2023 · 146 citations
  25. Unsupervised Ontology Induction from Text ↗Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics · no summary yetHoifung Poon, Pedro Domingos2010 · 143 citations
  26. Joint Inference for Knowledge Extraction from Biomedical Literature ↗Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics · no summary yetHoifung Poon, Lucy Vanderwende2010 · 141 citations
  27. Probabilistic Frame Induction ↗Proceedings of the 2013 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetJackie Chi Kit Cheung, Hoifung Poon, Lucy Vanderwende2013 · 139 citations
  28. UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition ↗arXiv:2308.03279 · no summary yetWenxuan Zhou et al.2023 · 120 citations
  29. A foundation model for joint segmentation, detection and recognition of biomedical objects across nine modalities ↗Nature Methods · no summary yetTheodore Zhao et al.2024 · 110 citations
  30. Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies ↗Proceedings of the National Academy of Sciences · no summary yetStephen E. Kurtz et al.2017 · 110 citations
  31. Unifying Logical and Statistical AI ↗Proceedings - Symposium on Logic in Computer Science · no summary yetPedro Domingos et al.2016 · 92 citations
  32. Upper Bounds of Dynamic Chromatic Number. ↗no summary yetHong‐Jian Lai, Bruce Montgomery, Hoifung Poon2003 · 84 citations
  33. Grounded Unsupervised Semantic Parsing ↗no summary yetHoifung Poon2013 · 83 citations
  34. A general method for reducing the complexity of relational inference and its application to MCMC ↗no summary yetHoifung Poon, Pedro Domingos, Marc Sumner2008 · 81 citations
  35. Chapter 1. Neural-Symbolic Learning and Reasoning: A Survey and Interpretation1 ↗Frontiers in artificial intelligence and applications · no summary yetTarek R. Besold et al.2021 · 78 citations
  36. An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data ↗Scientific Reports · no summary yetChristoph Lippert et al.2013 · 73 citations
  37. Deep Probabilistic Logic: A Unifying Framework for Indirect Supervision ↗Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing · no summary yetHai Wang, Hoifung Poon2018 · 68 citations
  38. Multimodal AI generates virtual population for tumor microenvironment modeling ↗Cell · no summary yetJeya Maria Jose Valanarasu et al.2025 · 57 citations
  39. Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation ↗arXiv:2403.08002 · Nature Communications volume 16, Article number: 3108 (2025) · no summary yetJuan Manuel Zambrano Chaves et al.2024 · 57 citations
  40. The Microsoft Toolkit of Multi-Task Deep Neural Networks for Natural Language Understanding ↗Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics: System Demonstrations · no summary yetXiaodong Liu et al.2020 · 56 citations
  41. Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learning ↗arXiv (Cornell University) · no summary yetSheng Zhang et al.2022 · 54 citations
  42. DISTANT SUPERVISION FOR CANCER PATHWAY EXTRACTION FROM TEXT ↗Pacific Symposium on Biocomputing (PSB) · no summary yetHoifung Poon, Kristina Toutanova, Chris Quirk2014 · 52 citations
  43. Self-Verification Improves Few-Shot Clinical Information ExtractionarXiv:2306.00024 · IMLH 2023Zelalem Gero, Chandan Singh, Hao Cheng, et al.2023 · 51 citations
  44. mDPO: Conditional Preference Optimization for Multimodal Large Language ModelsConference on Empirical Methods in Natural Language Processing (EMNLP)Fei Wang, Wenxuan Zhou, James Y. Huang, et al.2024 · 50 citations
  45. Knowledge-Rich Self-Supervision for Biomedical Entity Linking ↗Findings of the Association for Computational Linguistics: EMNLP 2022 · no summary yetSheng Zhang et al.2022 · 49 citations
  46. MuirBench: A Comprehensive Benchmark for Robust Multi-image Understanding ↗arXiv (Cornell University) · no summary yetFei Wang et al.2024 · 48 citations
  47. Language ID in the Context of Harvesting Language Data off the Web ↗Proceedings of the 12th Conference of the European Chapter of the ACL (EACL 2009) · no summary yetFei Xia, William Lewis, Hoifung Poon2009 · 46 citations
  48. Machine Reading at the University of Washington ↗Proceedings of the NAACL HLT 2010 First International Workshop on Formalisms and Methodology for Learning by Reading · no summary yetHoifung Poon et al.2010 · 45 citations
  49. Markov Logic ↗Lecture notes in computer science · no summary yetPedro Domingos et al.2008 · 39 citations
  50. Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology ↗arXiv (Cornell University) · no summary yetCliff Wong et al.2023 · 36 citations
  51. Grounded Semantic Parsing for Complex Knowledge Extraction ↗Proceedings of the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetAnkur P. Parikh, Hoifung Poon, Kristina Toutanova2015 · 35 citations
  52. Toward structuring real-world data: Deep learning for extracting oncology information from clinical text with patient-level supervision ↗Patterns · no summary yetSam Preston et al.2023 · 34 citations
  53. Exploring the Boundaries of GPT-4 in Radiology ↗Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing · no summary yetQianchu Liu et al.2023 · 33 citations
  54. Multilingual translation for zero-shot biomedical classification using BioTranslator ↗Nature Communications · no summary yetHanwen Xu et al.2023 · 31 citations
  55. Just Add Weights: Markov Logic for the Semantic Web ↗Lecture notes in computer science · no summary yetPedro Domingos et al.2008 · 29 citations
  56. Biomedical Natural Language Processing in the Era of Large Language Models ↗Annual Review of Biomedical Data Science · no summary yetNaoto Usuyama et al.2025 · 25 citations
  57. Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events ↗arXiv (Cornell University) · no summary yetGu, Yu et al.2023 · 22 citations
  58. DoubleTransfer at MEDIQA 2019: Multi-Source Transfer Learning for Natural Language Understanding in the Medical Domain ↗Proceedings of the 18th BioNLP Workshop and Shared Task · no summary yetYichong Xu et al.2019 · 22 citations
  59. A perspective for adapting generalist AI to specialized medical AI applications and their challenges ↗npj Digital Medicine · no summary yetZifeng Wang et al.2025 · 21 citations
  60. Med-RLVR: Emerging Medical Reasoning from a 3B base model via reinforcement Learning ↗arXiv (Cornell University) · no summary yetSheng Zhang et al.2025 · 21 citations
  61. Estimating Accuracy from Unlabeled Data: A Probabilistic Logic Approach ↗arXiv (Cornell University) · no summary yetEmmanouil Antonios Platanios et al.2017 · 21 citations
  62. Machine reading: a Killer app for statistical relational AI ↗no summary yetHoifung Poon, Pedro Domingos2010 · 21 citations
  63. DocLens: Multi-aspect Fine-grained Evaluation for Medical Text Generation ↗Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetYiqing Xie et al.2024 · 18 citations
  64. Offset Unlearning for Large Language Models ↗arXiv (Cornell University) · no summary yetJames Y. Huang et al.2024 · 17 citations
  65. Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature ↗arXiv:2106.13375 · no summary yetYu Wang et al.2021 · 17 citations
  66. Foundation Models for Biomedical Image Segmentation: A Survey ↗arXiv (Cornell University) · no summary yetHo Hin Lee et al.2024 · 16 citations
  67. BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys ↗arXiv (Cornell University) · no summary yetYu Gu et al.2023 · 16 citations
  68. Self-Supervised Self-Supervision by Combining Deep Learning and Probabilistic Logic ↗Proceedings of the AAAI Conference on Artificial Intelligence · no summary yetHunter Lang, Hoifung Poon2021 · 14 citations
  69. Targeted Adversarial Training for Natural Language Understanding ↗Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · no summary yetLis Pereira et al.2021 · 14 citations
  70. Wide-Open: Accelerating public data release by automating detection of overdue datasets ↗PLoS Biology · no summary yetMaxim Grechkin, Hoifung Poon, Bill Howe2017 · 14 citations
  71. Widespread Adoption of Precision Anticancer Therapies After Implementation of Pathologist-Directed Comprehensive Genomic Profiling Across a Large US Health System ↗JCO Oncology Practice · no summary yetAlexa K. Dowdell et al.2024 · 13 citations
  72. Multimodal Foundation Models for Medical Imaging - A Systematic Review and Implementation Guidelines ↗medRxiv · no summary yetShih-Cheng Huang et al.2024 · 13 citations
  73. Modular Self-Supervision for Document-Level Relation Extraction ↗Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing · no summary yetSheng Zhang et al.2021 · 13 citations
  74. TRIALSCOPE — A Framework for Clinical Trial Simulation from Real-World Data ↗NEJM AI · no summary yetJavier González Hernández et al.2025 · 11 citations
  75. Continual Contrastive Finetuning Improves Low-Resource Relation Extraction ↗Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetWenxuan Zhou et al.2023 · 9 citations
  76. CMT in TREC-COVID Round 2: Mitigating the Generalization Gaps from Web to Special Domain Search ↗arXiv (Cornell University) · no summary yetChenyan Xiong et al.2020 · 9 citations
  77. Compositional Zero-Shot Domain Transfer with Text-to-Text Models ↗Transactions of the Association for Computational Linguistics · no summary yetFangyu Liu et al.2023 · 8 citations
  78. MetaScale: Test-Time Scaling with Evolving Meta-ThoughtsFindings of the Association for Computational LinguisticsQin Liu, Wenxuan Zhou, Nan Xu, et al.2026 · 7 citations
  79. MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging ↗arXiv (Cornell University) · no summary yetNoel Codella et al.2024 · 7 citations
  80. BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once ↗arXiv (Cornell University) · no summary yetTheodore Zhao et al.2024 · 7 citations
  81. Spanning Trails Connecting Given Edges ↗Graphs and Combinatorics · no summary yetHong‐Jian Lai et al.2005 · 7 citations
  82. Generative Medical Event Models Improve with Scale ↗arXiv (Cornell University) · no summary yetShane Waxler et al.2025 · 6 citations
  83. EZLearn: Exploiting Organic Supervision in Large-Scale Data Annotation ↗arXiv (Cornell University) · no summary yetMaxim Grechkin, Hoifung Poon, Bill Howe2017 · 6 citations
  84. Markov Logic: A Unifying Language for Structural and Statistical Pattern Recognition ↗Lecture notes in computer science · no summary yetPedro Domingos et al.2008 · 6 citations
  85. X-Reasoner: Towards Generalizable Reasoning Across Modalities and Domains ↗arXiv (Cornell University) · no summary yetQianchu Liu et al.2025 · 5 citations
  86. When an Image is Worth 1,024 x 1,024 Words: A Case Study in Computational Pathology ↗arXiv (Cornell University) · no summary yetWenhui Wang et al.2023 · 5 citations
  87. Cycle Cover Ratio of Regular Matroids ↗European Journal of Combinatorics · no summary yetHong‐Jian Lai, Hoifung Poon2002 · 5 citations
  88. Exploring Scaling Laws for EHR Foundation Models ↗arXiv (Cornell University) · no summary yetSheng Zhang et al.2025 · 4 citations
  89. Boltzmann Attention Sampling for Image Analysis with Small Objects ↗IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings · no summary yetTheodore Zhao et al.2025 · 4 citations
  90. Attribute Structuring Improves LLM-Based Evaluation of Clinical Text Summaries ↗arXiv (Cornell University) · no summary yetZelalem Gero et al.2024 · 4 citations
  91. TRIALSCOPE: A Unifying Causal Framework for Scaling Real-World Evidence Generation with Biomedical Language Models ↗arXiv (Cornell University) · no summary yetJavier González et al.2023 · 4 citations
  92. Towards Structuring Real-World Data at Scale: Deep Learning for Extracting Key Oncology Information from Clinical Text with Patient-Level Supervision ↗arXiv (Cornell University) · no summary yetSam Preston et al.2022 · 4 citations
  93. Markov Logic: A Language and Algorithms for Link Mining ↗Springer eBooks · no summary yetPedro Domingos et al.2010 · 4 citations
  94. Nowhere zero 4‐flow in regular matroids ↗Journal of Graph Theory · no summary yetHong‐Jian Lai, Xiangwen Li, Hoifung Poon2005 · 4 citations
  95. Universal Abstraction: Harnessing Frontier Models to Structure Real-World Data at Scale ↗arXiv (Cornell University) · no summary yetCliff Wong et al.2025 · 3 citations
  96. From Introspection to Best Practices: Principled Analysis of Demonstrations in Multimodal In-Context Learning ↗Proceedings of the 2025 Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers) · no summary yetNan Xu et al.2025 · 3 citations
  97. Pareto Optimal Learning for Estimating Large Language Model Errors ↗Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · no summary yetTheodore Zhao et al.2024 · 3 citations
  98. EZLearn: Exploiting Organic Supervision in Automated Data Annotation ↗International Joint Conference on Artificial Intelligence · no summary yetMaxim Grechkin, Hoifung Poon, Bill Howe2018 · 3 citations
  99. Unsupervised ontological induction from text ↗no summary yetHoifung Poon, Pedro Domingos2010 · 3 citations
  100. BiomedParse-V: Scaling Foundation Model for Universal Text-Guided Volumetric Biomedical Image Segmentation ↗Lecture notes in computer science · no summary yetTheodore Zhao et al.2026 · 2 citations

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