PeerJ Computer Science 2016: all accepted papers
- Probabilistic programming in Python using PyMC3 ↗John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck2,508 citations
- Predicting judicial decisions of the European Court of Human Rights: a Natural Language Processing perspectiveΝικόλαος Αλέτρας, Dimitrios Tsarapatsanis, Daniel Preoțiuc-Pietro et al.810 citations · our summary
- OncoLnc: linking TCGA survival data to mRNAs, miRNAs, and lncRNAs ↗Jordan Anaya639 citations
- Software citation principles ↗Arfon M. Smith, Daniel S. Katz, Kyle Evan Niemeyer et al.276 citations
- Multiple comparative metagenomics using multiset k -mer counting ↗Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou et al.118 citations
- Clawpack: building an open source ecosystem for solving hyperbolic PDEs ↗Kyle T. Mandli, Aron Ahmadia, Marsha Berger et al.109 citations
- Software development: do good manners matter? ↗Giuseppe Destefanis, Marco Ortu, Steve Counsell et al.88 citations
- Decentralized provenance-aware publishing with nanopublications ↗Tobias Kuhn, Christine H. Chichester, Michael O. Krauthammer et al.86 citations
- Machine learning can differentiate venom toxins from other proteins having non-toxic physiological functions ↗Ranko Gaćeša, David J. Barlow, Paul F. Long68 citations
- OSoMe: the IUNI observatory on social media ↗Clayton A. Davis, Giovanni Luca Ciampaglia, Luca Maria Aiello et al.66 citations
- Incorporating popularity in a personalized news recommender system ↗Nirmal Jonnalagedda, Susan Gauch, Kevin Labille et al.57 citations
- Software process improvement: a systematic mapping study on the state of the art ↗Marco Kuhrmann, Philipp Diebold, Jürgen Münch56 citations
- SNF: synthesizing high performance NFV service chains ↗Georgios P. Katsikas, Marcel Enguehard, Maciej Kuźniar et al.52 citations
- A technology prototype system for rating therapist empathy from audio recordings in addiction counseling ↗Bo Xiao, Che-Wei Huang, Zac E. Imel et al.50 citations
- Competition and cooperation with virtual players in an exergame ↗Lindsay Alexander Shaw, Jude Buckley, Paul Michael Corballis et al.49 citations
- Deep learning for constructing microblog behavior representation to identify social media user’s personality ↗Xiaoqian Liu, Tingshao Zhu45 citations
- Detecting periodicities with Gaussian processes ↗Nicolas Durrande, James J. Hensman, Magnus Rattray et al.39 citations
- MonoPhy : a simple R package to find and visualize monophyly issues ↗Orlando Schwery, Brian C. O’Meara39 citations
- DAE Tools: equation-based object-oriented modelling, simulation and optimisation software ↗Dragan Nikolić37 citations
- Collaboro: a collaborative (meta) modeling tool ↗Javier Luis Izquierdo, Jordi Cabot36 citations
- Computational drug repositioning based on side-effects mined from social media ↗Timothy S. Nugent, Vassilis Plachouras, Jochen L. Leidner34 citations
- Nanopublication beyond the sciences: the PeriodO period gazetteer ↗Patrick Golden, Ryan B. Shaw26 citations
- A systematic analysis of the science of sandboxing ↗Michael Maass, Adam Sales, Benjamin Chung et al.24 citations
- Tolerance-based interaction: a new model targeting opinion formation and diffusion in social networks ↗Alexandru Topîrceanu, Mihai Udrescu, Mircea Vlăduţiu et al.22 citations
- Alternating guided image filtering ↗Alexander Toet21 citations
- A software for parameter optimization with Differential Evolution Entirely Parallel method ↗Konstantin N. Kozlov, A. M. Samsonov, Maria Samsonova18 citations
- How are functionally similar code clones syntactically different? An empirical study and a benchmark ↗Stefan Wagner, Asim Abdulkhaleq, Ivan Bogicevic et al.17 citations
- Uncertainty modeling process for semantic technology ↗Rommel Novaes Carvalho, Kathryn Blackmond Laskey, Paulo Costa17 citations
- Iterative guided image fusion ↗Alexander Toet15 citations
- Matrix Depot: an extensible test matrix collection for Julia ↗Weijian Zhang, Nicholas John Higham15 citations
- Complexity curve: a graphical measure of data complexity and classifier performance ↗Julian Zubek, Dariusz Plewczyński14 citations
- Research collaboration and topic trends in Computer Science based on top active authors ↗Yan Wu, Srinivasan Venkatramanan, Dah Ming Chiu14 citations
- Sonification of reference markers for auditory graphs: effects on non-visual point estimation tasks ↗Oussama Metatla, Nick Bryan–Kinns, Tony Stockman et al.13 citations
- Fuzzy based binary feature profiling for modus operandi analysis ↗M.A.P. Chamikara, Akalanka Galappaththi, Roshan Yapa et al.11 citations
- Large-scale comparative visualisation of sets of multidimensional data ↗D. Vohl, David G. Barnes, Christopher J. Fluke et al.11 citations
- A PCA-based bio-motion generator to synthesize new patterns of human running ↗José María Baydal Bertomeu, Juan V. Durá‐Gil, Ana Piérola et al.10 citations
- PATACSDB—the database of polyA translational attenuators in coding sequences ↗Małgorzata Habich, Sergej Djuranović, Paweł Szczęsny10 citations
- BioAssay Templates for the semantic web ↗Alex M. Clark, Nadia K. Litterman, Janice E. Kranz et al.9 citations
- Capturing the interplay of dynamics and networks through parameterizations of Laplacian operators ↗Xiaoran Yan, Shang‐Hua Teng, Kristina Lerman et al.9 citations
- Decomposed multi-objective bin-packing for virtual machine consolidation ↗Eli M. Dow9 citations
- Ship space to database: emerging infrastructures for studies of the deep subseafloor biosphere ↗Peter T. Darch, Christine L. Borgman9 citations
- Are you ashamed? Can a gaze tracker tell? ↗Rytis Maskeliūnas, Vidas Raudonis8 citations
- PhilDB: the time series database with built-in change logging ↗Andrew MacDonald7 citations
- TCP adaptation with network coding and opportunistic data forwarding in multi-hop wireless networks ↗Chen Zhang, Yuanzhu Chen, Cheng Li7 citations
- Investigating the effect of the reality gap on the human psychophysiological state in the context of human-swarm interaction ↗Gaëtan Podevijn, Rehan O’Grady, Carole Fantini‐Hauwel et al.6 citations
- Evolution maps and applications ↗Ofer Biller, Irina Rabaev, Klara Kedem et al.5 citations
- Give the people what they want: studying end-user needs for enhancing the web ↗Tak Yeon Lee, Benjamin B. Bederson5 citations
- Toward physiological indices of emotional state driving future ebook interactivity ↗Jan B. F. van Erp, Maarten A.J. Hogervorst, Ysbrand D. van der Werf5 citations
- A Socratic epistemology for verbal emotional intelligence ↗Abe Kazemzadeh, James Gibson, Panayiotis Georgiou et al.4 citations
- Probabilistic biomechanical finite element simulations: whole-model classical hypothesis testing based on upcrossing geometry ↗Todd C. Pataky, Michihiko KOSEKI, Philip G. Cox4 citations
- Smart Brix—a continuous evolution framework for container application deployments ↗Johannes M. Schleicher, Michael Vögler, Christian Inzinger et al.4 citations
- GRNsight: a web application and service for visualizing models of small- to medium-scale gene regulatory networks ↗Kam D Dahlquist, John David N. Dionisio, Ben G Fitzpatrick et al.3 citations
- A computational framework for colour metrics and colour space transforms ↗Ivar Farup2 citations
- Audio segmentation using Flattened Local Trimmed Range for ecological acoustic space analysis ↗Giovany Vega, Carlos J. Corrada-Bravo, Thomas Mitchell Aide2 citations
- Electronic laboratory notebooks in a public–private partnership ↗Lea A. I. Vaas, Gesa Witt, Björn Windshügel et al.2 citations
- Learning structural bioinformatics and evolution with a snake puzzle ↗Gonzalo S. Nido, Ludovica Bachschmid-Romano, Ugo Bastolla et al.2 citations
- Continuously revised assurance cases with stakeholders’ cross-validation: a DEOS experience ↗Kimio Kuramitsu1 citation
- Efficient online detection of temporal patterns ↗Shlomi Dolev, Jonathan Goldfeld, Rami Puzis et al.1 citation
- HBPF: a Home Blood Pressure Framework with SLA guarantees to follow up hypertensive patients ↗Josep Cuadrado, Jordi Vilaplana, Jordi Mateo et al.1 citation
- Information theoretic alignment free variant calling ↗Justin Bedő, Benjamin Goudey, Jeremy Wazny et al.1 citation
- Managing contamination delay to improve Timing Speculation architectures ↗Naga Durga Prasad Avirneni, Prem Kumar Ramesh, Arun K. Somani1 citation
- Implementing generalized deep-copy in MPI ↗Joss Whittle, Rita Borgo, Mark W. Jones
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